PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G208000.1
Common NameB456_004G208000, LOC105793685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 232aa    MW: 24839.9 Da    PI: 6.2424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G208000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1770118255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r++  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Gorai.004G208000.1  70 LYRGIRRR--SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 118
                         69***854..6*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1169118IPR001471AP2/ERF domain
CDDcd000182.19E-1769128No hitNo description
PROSITE profilePS5103220.45570126IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1870128IPR016177DNA-binding domain
SMARTSM003805.5E-2870132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-2770127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MADPNNPTNV PQLNQSSQRP VLLSLDQHSL ITTNSHTCQN PSPACHGLPP PTPRKANMAS  60
ASSPSGKHPL YRGIRRRSGK WVSEIREPRK TTRIWLGTYP TPEMAAAAYD VAALALKGAE  120
AFVNFPASVA SYPLPASISS ADIRKAAATA ALLKKAESNG IEIDLGSGHP HPAKKEEMTS  180
TEEYMDEDVF LNLPNLLVDM AEGLLVSPPR LSSTPSDDSP ENSDGESLWS Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-1466131368ATERF1
2gcc_A7e-1466131368ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477988.11e-170PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-55ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D2N1E81e-170A0A0D2N1E8_G
STRINGVIT_16s0100g00400.t018e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-49ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]